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A “latch” module (consisting of a β-hairpin loop that emanates with the OB area) occupies the major groove and completes the circumferential clamp through contacts involving the suggestion with the loop and the surface from the NTase area. The clamp-closing contacts are positioned at “6 o'clock” around the DNA circumference (denoted by the crimson arrow
), which is identical angular place as being the covalent connections among the ChVLig OB area plus the strands from the latch. Therefore, Mother nature has uncovered incredibly unique structural solutions to the situation of DNA envelopment by ATP-dependent ligases.
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; with DNA omitted) were being superimposed with regard for their NTase domains and after that offset laterally to reveal the large movement on the OB domain triggered by nick recognition.
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The zinc-finger module plays a structural role in bridging the OB and HhH domains. Area Ia will make no contacts While using Ligaz the DNA duplex, in keeping with its dispensability for catalysis of strand closure on an AppDNA substrate. (No electron density was observed for the C-terminal BRCT area.)